rs27658817 SNP Detail

Summary

• ID
  rs27658817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:8983083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTAGCTTA GTACTGGGGC
  AGTTTCAGAC CAGTGAGGGT TCTTGGTTAT CCCTGCCCAC TACCCGCCCC CCCCAAATAC
  CAGGTTTTAT GCACTACCCT GCACGCGCGC GCGCGCGCGC GCGCGCGCAC ACACACACAC
  ACACACACAC ACACACACAC ACACACACAC ACACACACAC GGCGAGTCCT GGCTTGAGGA
  R
  CCCATATAGT ACATGTCTAC CTACCTCTAG CCATATCTTC TATATGTACT TCCCTGGGTG
  AGCACCTGGT TACTTAGAAC AATCAGTTCT TCTGAATAAC ATCACAGAAG GGAAGGGATA
  GTTAGGGCAG GAGGCCAGGT TCCTAGGTCA CAGAATTTAC TATACTGTCA GGCTGACAAC
  TTTCCAATCA TTTCTGTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37858537	NES08668955	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27658817					SNP	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37858537	NES08668955	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8983083 () rs orientation: forward

Symbol	Name	Function Class
Rr588633	regulatory region 588633	1054 bp proximal