rs27657490 SNP Detail

Summary

• ID
  rs27657490
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:6789192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCAATGA GAACTTCACC
  CTTTGGTGAA GCTGGGTCAG TTGTTAAGTT CTGAAGGAAG CAACCTTACT ATCCTATTTT
  AGTTAAGCTA AGAATAGCTA ACACCCTTCA CCAAGCAAAG CCAGGAAGCT GTATGAGGAA
  CATCTCTGCT CTGTCTCAGT AACAATGTTA CTGCCTGAAA TCACAAACTA GTTTATCTAC
  S
  TGGATGTTTC AAAGAATGTG GTTCAAAACC CAGTTGGATT CGAAAGTTGA CTCCAAGCTG
  GCATTTCAGA AGATGGTCCT TTCATTATTA TTCTATATGA GGAATTACTC TATATAAATT
  CGTTCCATTT ACAATGATCA ATAATATCCC CATTTGCCCC TTTCTCTTGG AATTCACTTG
  CACGAGACCT AGTTTGAATA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37866409	NES08658784	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	G	C	C	C		C	C	C
ss145964707	ENSMUSSNP1380587	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					C			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27657490					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37866409	NES08658784	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6789192 () rs orientation: forward

Symbol	Name	Function Class
Rr588421	regulatory region 588421	1883 bp distal
Rr588422	regulatory region 588422	1328 bp proximal
Tox	thymocyte selection-associated high mobility group box	Intron