rs27657489 SNP Detail

Summary

• ID
  rs27657489
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:6789550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTTCTCT TGGAATTCAC
  TTGCACGAGA CCTAGTTTGA ATAATCCATT TCCTTATGGA CAAAGAAGCA TCAGCGGCAT
  AAAGACAAGA ATAACACAAC CCCCTTCCCA ACCAGAGGTC AGATTATCAT AAAATGAATC
  ATGCACTCAA TACTTATCAG CAAGATGGTA CATAAAACAG CCACTGGACA TGTAATGGTT
  R
  TCATTTAAGA AATACAATTT CCAGGCATAG AGGAGTAGAT AGATAAATGT GCTTTGTTTG
  GCCAAGGCAG AAAAAATACA TTATGAAACA TGCTATGTGG ATAAAGACTA TAGTGAAATG
  GATGAAATGG GGAGCCAAAA GAAAATTGCA TCACATATGT GTGTGTGTGT GTATATATAT
  ATATATATAT ATATATATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37866408	NES08658785	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27657489					SNP	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37866408	NES08658785	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6789550 () rs orientation: forward

Symbol	Name	Function Class
Rr588422	regulatory region 588422	970 bp proximal
Tox	thymocyte selection-associated high mobility group box	Intron