rs27657482 SNP Detail

Summary

• ID
  rs27657482
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:6792766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGAAGAA AGTTTTAAAA
  AATGGGAACT AGAGAAACAC AGCATTAAAC GTGTTCCAAG ATGCCGAGGG AGCTAACCAT
  GCTATACCAG TCTGGTAGAC TTGCTGGCTT TGCACTTGGT GTTAAAATTG CAGGTTTCAC
  TCACCAGCCC TTAGCTTCGC ATGGTAAATA TACTTCCTGT AGGAGAAGGT GGTTACTCAA
  R
  AGCTTTTGGA CAAATTTCAA TTGTATAATT ACATTGCATC TAAATTCCTC CTGTAGCTTC
  ACCTGGATAA AGAATTTCTT TTTTACTTCT AATCCAAAAT TCTTGAGCAG CTTTTCTCTA
  CCCTGCTAAC TAGTTGTTGT GTTTCTGTCC CTGGCAGTAT TGGAAGAGGA CTCAGATGGG
  CTTTTCCACT CCTATAGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37866401	NES08658679	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27657482					SNP	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37866401	NES08658679	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6792766 () rs orientation: forward

Symbol	Name	Function Class
Rr588422	regulatory region 588422	1812 bp distal
Rr588423	regulatory region 588423	381 bp distal
Tox	thymocyte selection-associated high mobility group box	Intron