rs27656980 SNP Detail

Summary

• ID
  rs27656980
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:8379444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGGACAT CTGCTACACA
  GGTTTAGGGC CTATTGTAAT AGTCTCATTT TCATTTAATT ACCAGCTTAA AGACCTCTCT
  AAATACAGCC ACAAATTCAG GCGACTCAGG GCTAGAACTA CAACCTGTGA ACCAGGGATG
  AGGATGGACA GTTCATCCCA TAAACAGAAA AGGAGAGAGA AAATAAAGAC ACCATACAAA
  Y
  GAGTCTTCAA TTCTAGGAGT GAACATTCCT TGGAAACCTG CTACTCACAG GTATCCAGTG
  ACTAATTCCC AGTGCAGCCA GCCCCTCTCT CTCCATCAGC CTTCCCGGAA ACTCGTCCAC
  CGGTATTACC ATCTAGACAA AGTTTCCATA AACTTCTTGG ATTTGGCCAG CCAGCTATGG
  CTTCCCTACC CAGATAGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37860499	NES08656868	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27656980					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37860499	NES08656868	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8379444 () rs orientation: forward

Symbol	Name	Function Class
Gm42252	predicted gene, 42252	within coordinates
Rr588523	regulatory region 588523	1296 bp proximal
Rr588524	regulatory region 588524	1402 bp proximal
Rr588525	regulatory region 588525	1938 bp proximal