rs27656971 SNP Detail

Summary

• ID
  rs27656971
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:8379950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCATGATG TGCTGGCATC
  ATTGCTGTCT TCAACACTCA GCCAATGTGT CTGAGCTACT TGGAAAGATC CATCCTCTTA
  ACAGCTGATA TGATTCTCAT ATTTTGTTTA CTCCAAACAT GGACTCTTGC CTTCAGGCCT
  CATAGAGAGC AGCATTCCAA GAACATATTA AAAATGTCTG ACATAGTGTG CCCAGCAGAC
  W
  AAGTGTTCCA GTGTACTGAC AGAGGGTTGG GAGAGCCATA ACTCACACAT AAAGATCTGT
  GGCCTCTCCC AGACCACCCT GTCTCACGCT TCACTTCTGA CTTGAAAGCC AGAGGCCTCT
  GACCTAAAGT TCAAATTGAC TTGAAGAGAC TTCAGGCTTC TATTTTGGTT TTCATGCAAG
  GAAATACAAA TTTAAGATAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37860490	NES08656877	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27656971					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37860490	NES08656877	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8379950 () rs orientation: forward

Symbol	Name	Function Class
Gm42252	predicted gene, 42252	within coordinates
Rr588523	regulatory region 588523	790 bp proximal
Rr588524	regulatory region 588524	896 bp proximal
Rr588525	regulatory region 588525	1432 bp proximal
Rr588526	regulatory region 588526	1767 bp proximal