rs27656968 SNP Detail

Summary

• ID
  rs27656968
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:8380585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTACATG TTCATGCATG
  GATGCACTCA TCTGTTCACA CACACATACA CACACACAAA GCTATATACA TATATGTACA
  CATGCATGTG CATACATGTG CCTGAAAATG TTGCATTATT TCCCCCTCTG ATCTACATAA
  AAAGTAAAGT TTACTGGAAT ATAAAATAAA TCCTGATTAA AAGTTAAGAC ATATTAAACA
  R
  AAACACTTTT AATCATTTAC TGTCAAAAAC AACTTAAAGT TATTGGATCT GTTATTTGTA
  CTCTTCCTCA CATATTTATG CTGGTTTCCA GATAAAATGG GGTGTGTCTC ATGGTAAAAA
  CATTTGTCTT AGGTCCCTAG AGACTATAGA GATCTATGAC TTTACTGCAC TGGATCTTTC
  CCTCCTGATT CTTGTAGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37860487	NES08656828	PERLEGEN	MM_PANEL2	f	SNP	G		A	G		G	G	G	A	G	G	G
ss45697263	mCV23479942	ABI	CRAMUS_MOUSE	f	SNP		G	A		G	G
ss145978346	ENSMUSSNP6683493	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27656968					SNP	G	G	A	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37860487	NES08656828	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8380585 () rs orientation: forward

Symbol	Name	Function Class
Gm42252	predicted gene, 42252	within coordinates
Rr588523	regulatory region 588523	155 bp proximal
Rr588524	regulatory region 588524	261 bp proximal
Rr588525	regulatory region 588525	797 bp proximal
Rr588526	regulatory region 588526	1132 bp proximal