rs27656967 SNP Detail

Summary

• ID
  rs27656967
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:8380738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAATATA AAATAAATCC
  TGATTAAAAG TTAAGACATA TTAAACAGAA ACACTTTTAA TCATTTACTG TCAAAAACAA
  CTTAAAGTTA TTGGATCTGT TATTTGTACT CTTCCTCACA TATTTATGCT GGTTTCCAGA
  TAAAATGGGG TGTGTCTCAT GGTAAAAACA TTTGTCTTAG GTCCCTAGAG ACTATAGAGA
  W
  CTATGACTTT ACTGCACTGG ATCTTTCCCT CCTGATTCTT GTAGTTTTAG ATATCTGTCC
  TGAATGTAAG ACTGTAAATA TAGAATAAAT TAGATGTAGG AAAACAAATG AGCACCAGGG
  GGCAGCATAG ACCTGATCCT GCACTGGGTC TTGTACAGGT CCAAAGTGAC TCTCTACTGA
  AGACATATCA GAATCTGAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37860486	NES08656829	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	T	T	T	T	T	A	T	T	T
ss145978350	ENSMUSSNP6122058	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27656967					SNP	T	T	A	A	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37860486	NES08656829	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8380738 () rs orientation: forward

Symbol	Name	Function Class
Gm42252	predicted gene, 42252	within coordinates
Rr588523	regulatory region 588523	2 bp proximal
Rr588524	regulatory region 588524	108 bp proximal
Rr588525	regulatory region 588525	644 bp proximal
Rr588526	regulatory region 588526	979 bp proximal