rs27656960 SNP Detail

Summary

• ID
  rs27656960
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:8381324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTTTTTG CAGGGGCAGA
  AGGCAGAGAG ACATGACTGC ACAACATGGG GTCAGGGAGC CATCAGGACC CCAGCCTTGG
  TCAGGAGACA GCAAAGGGGA GATTAAACCT TAGGAAGCTC AAAAGAATGC AAGCTAACAT
  GTTGCACCTT TTGTTAGGAC TTCTCTCTCC AAAACTTCAT GACTAGAAGA GAAGGACATT
  M
  GAGAGATCAG CAAATGAGAC AAAGTAGCTG AGGCCTCGCT GGTACTTGCT TTGTAGCCTG
  GAACCCAGAA GTATGGAGTC ACAGAGAACT TAGCCAGCCT CACTCTCTGT GGGACAGGTA
  GCCTCCTAGT TTATCAGGTA CCCGTGTGAT TTGTTCTGTC AAGCTGTAGG GTGAATGGAG
  CAAAGGAGTG TGGCTTGGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37860479	NES08656836	PERLEGEN	MM_PANEL2	f	SNP	C			C	C	C		C	C	A	C	A	C	C	C
ss45675882	mCV23479941	ABI	CRAMUS_MOUSE	f	SNP		C	A				C
ss145978354	ENSMUSSNP1771719	ENSEMBL	ENSEMBL_Sanger	f	SNP			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27656960					SNP	C	C	A	C	C	C	C	C	C	A	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37860479	NES08656836	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8381324 () rs orientation: forward

Symbol	Name	Function Class
Gm42252	predicted gene, 42252	within coordinates
Rr588523	regulatory region 588523	103 bp distal
Rr588524	regulatory region 588524	457 bp distal
Rr588525	regulatory region 588525	58 bp proximal
Rr588526	regulatory region 588526	393 bp proximal