rs27656956 SNP Detail

Summary

• ID
  rs27656956
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:8382276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAAATATT TCCCTGAATT
  AAACCCTCTA CCCCACAGTC TATTTCCTTT TTAAAATGCC AGTTTGCCAA CTACTTCAAA
  CCAACAAACA GGGCTTTCCT TCACCCTCAA GCCAGAGGGC CCCTGTGGAG TCCCACACTC
  TATGGGAATT CCTGAGGAGC AGGCATGAAG GCAGCTACCC TCAGGGTTTA GTAGCAGCTC
  Y
  GGTGCCCAGG ATGCAGGACA TCAGCCTTGT ATCCTGCAGT CACAAGAATG AGCGTGTACA
  AAGACGTGGA ATGACCTTGC AGATTATTCC AGCCCCTCAG GGCACAGATG AAAACAGAGC
  CTGGAATGGA AAGGCAAACA GGTGCCACAT GGGGTGCTGC AGGCAGAACG GGAGACCCCA
  GAATCAAGGA CAACTGGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37860475	NES08656840	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C		C	C	T	C		T	C	C	C
ss45604099	mCV23479940	ABI	CRAMUS_MOUSE	f	SNP		C	T				C	C
ss145978357	ENSMUSSNP6095803	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27656956					SNP	C	C	T	C	C	C	C	C	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37860475	NES08656840	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8382276 () rs orientation: forward

Symbol	Name	Function Class
Gm42252	predicted gene, 42252	within coordinates
Rr588523	regulatory region 588523	1055 bp distal
Rr588524	regulatory region 588524	1409 bp distal
Rr588525	regulatory region 588525	within coordinates
Rr588526	regulatory region 588526	538 bp distal