rs27656949 SNP Detail

Summary

• ID
  rs27656949
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:8382692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCCTGTCC TAAATGAACT
  GAATGGACAT TTCTAGAGGC AGGATCTGGG AACATGTATT AAAACAGCAC GGTACATCAT
  GTCTCCAAAA ATGAAGACAT TACACAGAAG AATTAGCCCC AAGAGGAGGA GGAGAGGCTC
  GGAGCTGAGT TTGAATCCCA GATCTGCCCT TTGACAAACT GGTGCCTCTG AACTCTGTTT
  Y
  CTTGGCTGGC CCTGAGAAGA TGTGAGTACC TCACTGTATG TAGAAATTCT TAAACCCTGG
  GGGCTAGCAT GCTCTCTGCC ACCTGGAGGT GGGAAGTCAA CAAGACTGCT AGAGTTGAGT
  CCTGGAACCT CTGGCTGTGA ACTGGGTGAG CTTGGACACA CCATTGGTCC TCCACAAAAT
  CTCCACCCAA AAGTGCAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37860468	NES08656847	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		T	T	C	T
ss145978395	ENSMUSSNP1792081	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27656949					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37860468	NES08656847	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8382692 () rs orientation: forward

Symbol	Name	Function Class
Gm42252	predicted gene, 42252	within coordinates
Rr588523	regulatory region 588523	1471 bp distal
Rr588524	regulatory region 588524	1825 bp distal
Rr588525	regulatory region 588525	270 bp distal
Rr588526	regulatory region 588526	954 bp distal