rs27655916 SNP Detail

Summary

• ID
  rs27655916
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:7855445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAACACTA ATGAGACAGG
  GAAATCAGAG ATATTCATGA ATTAAACAGT AAAGTGTTGA TCACAGAGCT AGAAAAAAAA
  AAAAAAACAA GGAAAAGGGA AGTCTGCATT CTCAAAAGCC AATAGATGAG TTTAAAAATG
  CTGTGACCTG CCATTGGGCA TAGTTCTTAT GATAGAATTT ATTGGACTTC ACAATGAGAA
  Y
  ATTACTGGTA ACATGAAGAA ATGATGTGTT TACACTGCAG AGTTGCAAAG CATAAATAGC
  CAAGTGCTTT CTCCCCAAAA CTCTCCATGA CCACGCTGAC AAGAAAGCCA GTGTGAAAAG
  ACAAAGTGAG GGGGCCAGCT GCTGCGATAT GAGCAGGAAT GTGGCTGAGA ACCAGCCAGA
  GAGTCTTGGA ATTAATCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37862640	NES08671845	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27655916					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37862640	NES08671845	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:7855445 () rs orientation: forward

Symbol	Name	Function Class
Rr588480	regulatory region 588480	1737 bp distal
Rr588481	regulatory region 588481	1887 bp distal