rs27655823 SNP Detail

Summary

• ID
  rs27655823
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:7892136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACCTCTC TGCTTATGTA
  ATCTTGAGGA GGGAGGGGGT TTGCACATCT TATCGGCTTC AGAGACTTCC TGAAACTCAT
  AAGTTATTTA CTTCTTGAGA CGTAATGAAT CTTTTCTACA ATTTCCTGAG TCACAACAAG
  CATCCTTTAG AACATTCTGG GACTTAATGA GCTTTTTAGG AAACTGCTAT GCAGCATACA
  Y
  ATACATGTAC TCCCTGTGTC CTGGCCAGAG ACACAGAGCT TACACGGCTT ATTCATTAGT
  GTTCCCATCA GTTCTCTAGG GAAGTTGCTA TTACAATCTC AAGTTTTGTT CTGGGTAAAC
  TGAACCTTAG CAGTTAAGTA AACTTTAAAA CTGCCATTTG ATTCAGAGCT TTGAGTTCTG
  ACCTTAGCTA GAAAATCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37862545	NES08670993	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27655823					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37862545	NES08670993	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:7892136 () rs orientation: forward

Symbol	Name	Function Class
Rr588482	regulatory region 588482	811 bp distal