rs27655820 SNP Detail

Summary

• ID
  rs27655820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:7892579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTC CTCCTGTCCT ATTCTCTTTC
  Y
  CTTATAACAC TTGTTTCAGT GTGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37862542	NES08670969	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C		C	C	C		C	C	C	C		C
ss45632080	mCV22981458	ABI	CRAMUS_MOUSE	f	SNP		T			T		C
ss145972976	ENSMUSSNP903446	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					C
ss321036726	CHEV_4_7819726	CHEVERUD	SCREENING_POP	f	SNP									C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27655820					SNP	C	T	C	C	T	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37862542	NES08670969	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:7892579 () rs orientation: forward

Symbol	Name	Function Class
Rr588482	regulatory region 588482	1254 bp distal