rs27655815 SNP Detail

Summary

• ID
  rs27655815
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:7893224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAAAAGC CAGGGGCAGC
  GCTCTCTGTC TTTCTCAGGC AAGGTGTTTG TTGTATACTA GAAAAGATAG TACTCTTTCT
  CCAGATACTT TCCAGTGAGC AAGGCAGTTT ATTTTAGTTG TGGTCTCAGA CCTTAGTCTA
  CAGATACTTG TTTGTTCCAC AGCTCCCTTG TCTCTGGAAA GATTAAAGCG CATACTCTGG
  Y
  ATTGTGACTT CTCAGGTTCT CCTACACCAG AACTCTGGAT CTGCAAAGCT TCACTGGGAA
  TCTAAAAGAA TGCACAGTAC GGCAGTGAGG TAGATACCAT GGAATGAATT TCAAGCTCTC
  CTTTACTAAA CTGGTCAAGA GTTCATCAAG ATGCATTTTA AATGAACTCC ACTAGTGTTA
  ACAAACACCC CAGTCTCTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37862537	NES08670917	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27655815					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37862537	NES08670917	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:7893224 () rs orientation: forward

Symbol	Name	Function Class
Rr588482	regulatory region 588482	1899 bp distal