rs27655438 SNP Detail

Summary

• ID
  rs27655438
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:9614006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCTGTC TGTCTCTGTC
  TCTCTGTCTT TGTCTCTCTT TCTACCATCT AACTTAATTG GTAGAGCAGT TGCAAGCTGG
  CTTGCTCTCA GCCCCTACAG CCTCAGACAA CGACTCAGCT CCCAGAGGCA AAGGCAAGCC
  TCTTCCAGAT GAGCTATTCA GAAGCAAAGG GGCCACTGCC TGGCTGCCCC AGACTTCTGA
  S
  GGACTCTTCC TGCCATGTTG CACTCCACTG CAGCTGCTTA CTGACACTGC TGAGGTTCAA
  ATGTCATCAG GCAATGACAA TAGTGGGATC AAATGTAAAA CTTTTTCTTA CAACATCTTG
  GTTTTTGTTC TGTAGATTCA TTACAGAAGT TAGAAGGCTT TTTAAAATTT ACATTTATAA
  ATATCTGTTT CTTTCATTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37855457	NES08650449	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27655438					SNP	G	G	G	G	G	C	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37855457	NES08650449	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9614006 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Asph	aspartate-beta-hydroxylase			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr588711	regulatory region 588711			453 bp proximal
Rr588712	regulatory region 588712			564 bp proximal
Rr588713	regulatory region 588713			1908 bp proximal
Tssr40900	transcription start site region 40900			82 bp upstream