rs27655430 SNP Detail

Summary

• ID
  rs27655430
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:9614758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGT CAATGGGGCA GGAAAGGCAG
  R
  CAGGGTTTAA ACACAGAAAT GCCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37855449	NES08650457	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G		G	G	G		G	A	G		A
ss45634518	mCV23073345	ABI	CRAMUS_MOUSE	f	SNP	G	A			A
ss145989650	ENSMUSSNP1312777	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss321039345	CHEV_4_9541905	CHEVERUD	SCREENING_POP	f	SNP									G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27655430					SNP	G	A	A	G	A	G	G	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37855449	NES08650457	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9614758 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Asph	aspartate-beta-hydroxylase			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr588711	regulatory region 588711			within coordinates
Rr588712	regulatory region 588712			167 bp distal
Rr588713	regulatory region 588713			1156 bp proximal
Tssr40900	transcription start site region 40900			834 bp upstream