rs27655427 SNP Detail

Summary

• ID
  rs27655427
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:9615308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGATTCC TCCAGCTATT
  GTCACTTTTG CAGAATGGAT GCCAAGACAA GCAGCTGTTC CACATGCATA TGGCCTAACA
  ATACAAATTA ATACATCCTG AGAAAAGGGC TAACAAGCAC ATGAAACCTG ACAGATATTC
  CGAGAGCTCA ATACACCAAA ATGACATAGA TGCTGATCGA TCATGCTGAA GTTTCTTCTC
  S
  TTCCTGCCCT GTACAGTCGG TAAGTACATA TCTTATTAGT ACACCAATAA TCTCAGAACT
  AAGCAAGAGT CTGAGATCAC CAGGACCAAA TACTGCCCCC TTGATAAAAA TAGGTGTGCT
  CTTCATTCAA GGGACCTTTA CTGGATCCAG GAAAGACAAA AATTCAGAAA GAGGAAATGC
  ATGCCACTGT ACAGACTCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37855446	NES08650415	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27655427					SNP	G	G	G	G	C	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37855446	NES08650415	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9615308 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Asph	aspartate-beta-hydroxylase			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr588711	regulatory region 588711			534 bp distal
Rr588712	regulatory region 588712			717 bp distal
Rr588713	regulatory region 588713			606 bp proximal
Tssr40900	transcription start site region 40900			1384 bp upstream