rs27654441 SNP Detail

Summary

• ID
  rs27654441
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:181208216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGCTTCTAG CCCTGTGTTT CCCTGGGCCC AGTCAAATAT
  CATTTTCCAT ATTCTAGATG CCTCTTTCTT TCTGAATCAA AGCATACTCA AACCAAAAAC
  Y
  ACAGTTCACT GCCCATCAGC CAGGGCCTCC TCCCTTAAAC CTGAACACCA GCTGGGCCAA
  TTCCAGGACA GCCAGGGCTA CACAGAGAAA CCCTGTCTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37850661	NES08687419	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	T		C	T	C	C	C	T
ss45285133	mCV23780148	ABI	CRAMUS_MOUSE	f	SNP		T	C				T	C
ss148402196	ENSMUSSNP4833275	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27654441					SNP	T	T	C	C	T	T	T	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37850661	NES08687419	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181208216 () rs orientation: forward

Symbol	Name	Function Class
Rr573031	regulatory region 573031	1902 bp proximal
Rr573032	regulatory region 573032	1993 bp proximal