rs27654440 SNP Detail

Summary

• ID
  rs27654440
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:181208323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACTGCCCAT CAGCCAGGGC CTCCTCCCTT AAACCTGAAC
  ACCAGCTGGG CCAATTCCAG GACAGCCAGG GCTACACAGA GAAACCCTGT CTCAAAAAAC
  Y
  GGAACCAAGG GCTGGTGAGA TGGCTCAGTG GGTTAGAGCA CCTGACTGCT CTTCCGAAGG
  TCCAGAGTTC AAATCCCAGC AACCACATGG TGGCTCACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37850660	NES08687421	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	C	C	C	T	C	C	T	C	C	C
ss148402206	ENSMUSSNP2377391	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27654440					SNP	C	C	T	T	C	C	C	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37850660	NES08687421	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181208323 () rs orientation: forward

Symbol	Name	Function Class
Rr573031	regulatory region 573031	1795 bp proximal
Rr573032	regulatory region 573032	1886 bp proximal