rs27654436 SNP Detail

Summary

• ID
  rs27654436
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:181209627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGTCCTT GGGCATTCTC
  ACCCAGGGTC AGCTTGTTCC CATGAGGACT TAGTGCTTGT GTACCCTGGT CTCAGGGGCA
  TATCCCCCCT AGCTGTTTAG AAAGGTGCCC ACTTCTTATA TCCATATGAC TCTAGTTAGA
  AAATAAGCCT AAAAACTCTC TTTACCTGTA GCCTTGTCTT AGCAGGTCCT AGTCTACCTC
  Y
  AAAACGGACA CTCAAATTTG AGATTTCCCA ATAGCATATC TCATGTAGAT GAAGATATCT
  AGTCAGGGCC TTGAAATTTA GGTCTCCTGC TCTAGGCTAT TCTCTGGGCC CCACTGTCAA
  GAAGACAAAG AATCTACCTT TCTCTAGGAG CTTGATATGG AATCTACCTT TCTCTAGGAG
  CTCTAGAGCA ATATGGCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37850656	NES08687288	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27654436					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37850656	NES08687288	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181209627 () rs orientation: forward

Symbol	Name	Function Class
Rr573031	regulatory region 573031	491 bp proximal
Rr573032	regulatory region 573032	582 bp proximal
Uckl1	uridine-cytidine kinase 1-like 1	1315 bp downstream