rs27654430 SNP Detail

Summary

• ID
  rs27654430
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:181210675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTGCCTG GCAGCTGCCA
  GAGAAGCCTG CCTTAACCTC TAGAATTCAG TAGCAGCCAG GCAGGGATGA ACATGAAACT
  TTGGTTCTGA AATCCTGAGG CTCTGGCCAT CTTGGAGCTA GTCTTCTTCC ACTACTCAGT
  CCTCGCCATA GCTGCCCACA CATCAGCTCC TGCTGGGTCC CTTGGTAGTA CAAATGTGGT
  Y
  GGAAGGAAGT GGTCACAGAG GCTAACTCAG AGCCCTAAGT ATTCTTGTCT CTGGGTCCAG
  GTCCGTCAGG TGAGCTGTGT GGTTCATCTG GAGGCCCCAC TTCTTCCCTT ATCACTATCA
  GACAATAAGT GAACAAGCTT TGACTGTAAG GAAAGTACAG TGCAAGGCAG AGAATGCCTT
  GTCCTGCTGG ACCTTTTACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37850650	NES08687303	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27654430					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37850650	NES08687303	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181210675 () rs orientation: forward

Symbol	Name	Function Class
Rr573031	regulatory region 573031	within coordinates
Rr573032	regulatory region 573032	445 bp distal
Uckl1	uridine-cytidine kinase 1-like 1	267 bp downstream