rs27654429 SNP Detail

Summary

• ID
  rs27654429
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:181210809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTAAGTATT CTTGTCTCTG GGTCCAGGTC CGTCAGGTGA
  GCTGTGTGGT TCATCTGGAG GCCCCACTTC TTCCCTTATC ACTATCAGAC AATAAGTGAA
  Y
  AAGCTTTGAC TGTAAGGAAA GTACAGTGCA AGGCAGAGAA TGCCTTGTCC TGCTGGACCT
  TTTACCTCAC CCTCAGATAC CTTGGGGAGA CTGCCTCAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37850649	NES08687306	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	C	C		T	T	C	C	C	C	T
ss45307789	mCV23780167	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					C		T
ss148402227	ENSMUSSNP3043409	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27654429					SNP	C	C	T	T	C	C	C	C	T	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37850649	NES08687306	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181210809 () rs orientation: forward

Symbol	Name	Function Class
Rr573031	regulatory region 573031	within coordinates
Rr573032	regulatory region 573032	579 bp distal
Uckl1	uridine-cytidine kinase 1-like 1	133 bp downstream