rs27654428 SNP Detail

Summary

• ID
  rs27654428
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:181210831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCAGGTCCG TCAGGTGAGC TGTGTGGTTC ATCTGGAGGC
  CCCACTTCTT CCCTTATCAC TATCAGACAA TAAGTGAACA AGCTTTGACT GTAAGGAAAG
  Y
  ACAGTGCAAG GCAGAGAATG CCTTGTCCTG CTGGACCTTT TACCTCACCC TCAGATACCT
  TGGGGAGACT GCCTCAACAG AGTCCACCCA GGTTACATT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37850648	NES08687308	PERLEGEN	MM_PANEL2	f	SNP	T			T	T		T	C	T	T	T	T	T
ss45284788	mCV23780429	ABI	CRAMUS_MOUSE	f	SNP	T	T	C			T		C
ss148402231	ENSMUSSNP4848445	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27654428					SNP	T	T	C	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37850648	NES08687308	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181210831 () rs orientation: forward

Symbol	Name	Function Class
Rr573031	regulatory region 573031	within coordinates
Rr573032	regulatory region 573032	601 bp distal
Uckl1	uridine-cytidine kinase 1-like 1	111 bp downstream