rs27652343 SNP Detail

Summary

• ID
  rs27652343
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178163942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTATTATCT ATAAATTATG
  ATTGTTCCAT CTCTTCCCAT ATTCTCAGCA GCTTTTATAC TCTTGTCTAA TTGCTTCCCT
  CCGTGCTTTA TTTTACAGTG GTGGCAAGGA GCTCCCTTAA ACTGTTTCTA ATGGGACGCC
  TCTAGTATTT TTACAATTAA TTATGAAGGT AATTTTTGGA TGGAAATGTG TATTTTTTTT
  W
  AAATCCTGTA AGGAGGTAAC CACCCATTTG CAAGCATCAG AAGTGGATAT TAAATTTTTA
  TTAAATGTCT TTATTGCCTA TAAAAAAGAC TTAATGGCAT GTCTCTCCTT TTCTCCTCCC
  ATGAATGCTG TGAAGGTGTT TTTAGATCCC AGACTGGAGC TCTTAAGCAT GTGAGTTTGG
  ACTCCTCATC ATCCATCTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	NZW/LacJ	PWD/PhJ
ss37847665	NES08695922	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	NZW/LacJ	PWD/PhJ
rs27652343					SNP	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37847665	NES08695922	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178163942 () rs orientation: forward

Symbol	Name	Function Class
Rr572420	regulatory region 572420	123 bp proximal