rs27652342 SNP Detail

Summary

• ID
  rs27652342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178164053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCTTAAA CTGTTTCTAA
  TGGGACGCCT CTAGTATTTT TACAATTAAT TATGAAGGTA ATTTTTGGAT GGAAATGTGT
  ATTTTTTTTA AAATCCTGTA AGGAGGTAAC CACCCATTTG CAAGCATCAG AAGTGGATAT
  TAAATTTTTA TTAAATGTCT TTATTGCCTA TAAAAAAGAC TTAATGGCAT GTCTCTCCTT
  Y
  TCTCCTCCCA TGAATGCTGT GAAGGTGTTT TTAGATCCCA GACTGGAGCT CTTAAGCATG
  TGAGTTTGGA CTCCTCATCA TCCATCTCCG TGTGAATTGG CTTCTAGCTG CCAGCAATGT
  ACTCAGACAT TTGCATAAAC CTCTTCTCTA ATTATCTTTT CCTGGGACCT GTCAGGCGCT
  GGCATCTGGT TTGCCTTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37847664	NES08695923	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27652342					SNP	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37847664	NES08695923	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178164053 () rs orientation: forward

Symbol	Name	Function Class
Rr572420	regulatory region 572420	12 bp proximal