rs27652341 SNP Detail

Summary

• ID
  rs27652341
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178164142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATCCTGT AAGGAGGTAA
  CCACCCATTT GCAAGCATCA GAAGTGGATA TTAAATTTTT ATTAAATGTC TTTATTGCCT
  ATAAAAAAGA CTTAATGGCA TGTCTCTCCT TTTCTCCTCC CATGAATGCT GTGAAGGTGT
  TTTTAGATCC CAGACTGGAG CTCTTAAGCA TGTGAGTTTG GACTCCTCAT CATCCATCTC
  S
  GTGTGAATTG GCTTCTAGCT GCCAGCAATG TACTCAGACA TTTGCATAAA CCTCTTCTCT
  AATTATCTTT TCCTGGGACC TGTCAGGCGC TGGCATCTGG TTTGCCTTGA CATCCTAAGA
  ACAGTCAAGA GTCTTTTGTC TTTCTTGCCT TAGTGGAGTT GCTTCTATCA GTGGTACAGG
  AGTGATCTGT GCCTTGAAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37847663	NES08695924	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27652341					SNP	C	G	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37847663	NES08695924	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178164142 () rs orientation: forward

Symbol	Name	Function Class
Rr572420	regulatory region 572420	within coordinates