rs27651491 SNP Detail

Summary

• ID
  rs27651491
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148044296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGTTACAG TGATGAGCCA CCACGTGGTT GCTGGGAATT
  GAACTCAGGT CCTCTGGAAG AACAGTCAGT GCTCTTTACT GCCACATGGT GGCTCACAAC
  Y
  GTCCATAACT CCACATCTAG GAAATCCTAC ATCCTCTCTT ATCTCCACAG GCACCAGGCA
  TGTGCCTGAT GCATATGGGC AGGCAAAACG CTCATATACA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ
ss37806328	NES09108971	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ
rs27651491					SNP	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37806328	NES09108971	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148044296 () rs orientation: forward

Symbol	Name	Function Class
Gm69767	predicted gene, 69767	1907 bp downstream
Rr604535	regulatory region 604535	401 bp proximal
Rr604536	regulatory region 604536	508 bp proximal