rs27651487 SNP Detail

Summary

• ID
  rs27651487
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148045649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATTC CATCTAGTTA GATGGGTGAG
  K
  CTGACCTGGC CAGGATGGCT TACAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37806324	NES09108975	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	T	G	G	G	T	G		T	G	G		G
ss147988242	ENSMUSSNP1471355	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					G
ss321416040	CHEV_4_147335301	CHEVERUD	SCREENING_POP	f	SNP										G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27651487					SNP	G	T	G	T	G	G	G	T	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37806324	NES09108975	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148045649 () rs orientation: forward

Symbol	Name	Function Class
Gm69767	predicted gene, 69767	554 bp downstream
Rr407044	regulatory region 407044	1092 bp proximal
Rr604535	regulatory region 604535	526 bp distal
Rr604536	regulatory region 604536	824 bp distal
Rr604537	regulatory region 604537	1627 bp proximal