rs27651485 SNP Detail

Summary

• ID
  rs27651485
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148046422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATA ATACCTTTGT TCTACTGCTG
  Y
  ATCTGGCAAA ACGGTCCCAT TCCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37806322	NES09108900	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	C	T	T	C		T	C	C	C		C
ss45639295	mCV23431761	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss147988250	ENSMUSSNP2978708	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss321416043	CHEV_4_147336074	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27651485					SNP	C	C	T	C	T	C	C	T	T	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37806322	NES09108900	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148046422 () rs orientation: forward

Symbol	Name	Function Class
Gm69767	predicted gene, 69767	within coordinates
Rr407044	regulatory region 407044	319 bp proximal
Rr407312	regulatory region 407312	1678 bp proximal
Rr604535	regulatory region 604535	1299 bp distal
Rr604536	regulatory region 604536	1597 bp distal
Rr604537	regulatory region 604537	854 bp proximal
Rr604538	regulatory region 604538	1459 bp proximal
Rr604539	regulatory region 604539	1724 bp proximal