rs27651483 SNP Detail

Summary

• ID
  rs27651483
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148046675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGT GTTCGCTTGC TTTCTCCAAC
  Y
  CTCCTGGTGC TGAGAGCCAG CTCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37806320	NES09108903	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	C		C	T	C		T	C	C	C		C
ss45691083	mCV23431763	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T	C
ss147988262	ENSMUSSNP3908416	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
ss321416045	CHEV_4_147336327	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27651483					SNP	C	C	T	C	T	C	C	T	C	T	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37806320	NES09108903	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148046675 () rs orientation: forward

Symbol	Name	Function Class
Gm69767	predicted gene, 69767	within coordinates
Rr407044	regulatory region 407044	66 bp proximal
Rr407312	regulatory region 407312	1425 bp proximal
Rr604535	regulatory region 604535	1552 bp distal
Rr604536	regulatory region 604536	1850 bp distal
Rr604537	regulatory region 604537	601 bp proximal
Rr604538	regulatory region 604538	1206 bp proximal
Rr604539	regulatory region 604539	1471 bp proximal