rs27651481 SNP Detail

Summary

• ID
  rs27651481
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148047866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAA GTAGTCCACT CACACCCAAC
  W
  CCTACAGATT AATATGAGTT TGTTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37806318	NES09108905	PERLEGEN	MM_PANEL2	f	SNP	A		T	A	T	A	A		T	T	A		T	A	A	A		A
ss45566900	mCV23432045	ABI	CRAMUS_MOUSE	f	SNP		A	T					T	T
ss147988275	ENSMUSSNP3034560	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T						T
ss321416047	CHEV_4_147337518	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27651481					SNP	A	A	T	A	T	A	A	T	T	T	A	A	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37806318	NES09108905	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148047866 () rs orientation: forward

Symbol	Name	Function Class
Gm69767	predicted gene, 69767	within coordinates
Rr407044	regulatory region 407044	within coordinates
Rr407312	regulatory region 407312	234 bp proximal
Rr604537	regulatory region 604537	118 bp distal
Rr604538	regulatory region 604538	15 bp proximal
Rr604539	regulatory region 604539	280 bp proximal