rs27651473 SNP Detail

Summary

• ID
  rs27651473
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148049620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT AAAGTTCAAT TTCCTTTTTC
  R
  TTATAATCAA TAGACGCCAG ATCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37806310	NES09108819	PERLEGEN	MM_PANEL2	f	SNP			G	A	G	G	G		A	G	G
ss147988281	ENSMUSSNP3889408	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G				G
ss321416057	CHEV_4_147339272	CHEVERUD	SCREENING_POP	f	SNP								G				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27651473					SNP	G	G	G	A	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37806310	NES09108819	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148049620 () rs orientation: forward

Symbol	Name	Function Class
Gm69767	predicted gene, 69767	1464 bp upstream
Rr407044	regulatory region 407044	886 bp distal
Rr407312	regulatory region 407312	1213 bp distal
Rr604537	regulatory region 604537	1872 bp distal
Rr604538	regulatory region 604538	1475 bp distal
Rr604539	regulatory region 604539	974 bp distal
Rr604540	regulatory region 604540	505 bp proximal