rs27651471 SNP Detail

Summary

• ID
  rs27651471
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148049697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTAAAGTTC AATTTCCTTT TTCATTATAA TCAATAGACG
  CCAGATCTCT GCAGCCGGCT AATGGCCTGC CTCTTCTAGA GATAACTTCC TGTTTTCTTC
  R
  TTACATACCT TGGGGCTTTT AACTTTACTG TTTTGGGGAG ATTTTTTAAT TTTTATTTTC
  TACCACTGGC TTCTGGGTTT GGGTGGTCAG GTGTGAAAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37806308	NES09108821	PERLEGEN	MM_PANEL2	f	SNP	G			G	G	G	G	A	G	G	G	G	G	G	G
ss147988290	ENSMUSSNP5442386	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27651471					SNP	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37806308	NES09108821	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148049697 () rs orientation: forward

Symbol	Name	Function Class
Gm69767	predicted gene, 69767	1541 bp upstream
Rr407044	regulatory region 407044	963 bp distal
Rr407312	regulatory region 407312	1290 bp distal
Rr604537	regulatory region 604537	1949 bp distal
Rr604538	regulatory region 604538	1552 bp distal
Rr604539	regulatory region 604539	1051 bp distal
Rr604540	regulatory region 604540	428 bp proximal