rs27648547 SNP Detail

Summary

• ID
  rs27648547
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148245969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCC CAATCCAGGT GAGTGAGTCA
  R
  CTTGGGGTCA GCATCCATGG CTAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37805386	NES09107672	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	A		G	A	G	A		G	A	A	A		A
ss45708220	mCV24937571	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					G		A
ss147994705	ENSMUSSNP4844056	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							A
ss321417745	CHEV_4_147535621	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27648547					SNP	A	A	G	A	G	A	A	G	G	A	G	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805386	NES09107672	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148245969 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15295	CpG island 15295			468 bp distal
Fbxo2	F-box protein 2			Intron
				Noncoding-Transcript-Variant
Fbxo44	F-box protein 44			1306 bp upstream
Rr398857	regulatory region 398857			1183 bp downstream
Rr604608	regulatory region 604608			881 bp distal
Rr604609	regulatory region 604609			within coordinates
Tssr40263	transcription start site region 40263			1316 bp downstream
Tssr40264	transcription start site region 40264			882 bp downstream
Tssr40265	transcription start site region 40265			860 bp downstream
Tssr40266	transcription start site region 40266			832 bp downstream
Tssr44596	transcription start site region 44596			1910 bp upstream
Tssr44597	transcription start site region 44597			1693 bp upstream
Tssr44598	transcription start site region 44598			1675 bp upstream
Tssr44599	transcription start site region 44599			1582 bp upstream
Tssr44600	transcription start site region 44600			1440 bp upstream