rs27648546 SNP Detail

Summary

• ID
  rs27648546
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148246015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGTGGCC AGTCTTCCCT
  CCTACTCCCA AGTCCTCACT CTCAGTCGGT GCCTGGCTTC AACATCATCC ACAGGGCCCC
  AGAATAGGCT ACCGTTTTCT TCCTGCTCCC AGGAAGTCCC TGGGCTCAGG GGCCCAATCC
  AGGTGAGTGA GTCAGCTTGG GGTCAGCATC CATGGCTAGA TAACTTTCCT ACAGCAACAA
  W
  GTGGCAAGTT GTGTGCAAGG GAGCAGGTGG GGGGGGCTGT AATCCGATCT GGGGCCTCAA
  TGCCAGGCCT AGGGGCCAGG AGAGAGGACT GGGTGAGGTG CACCTTTCCG GGGAGCATCA
  GGTATCTGCT GGGGCCAGGG CAGGGCTGGG TGATGGTAGA GAGGTGAGGA CGTTGGGCCC
  AGCTCTCCAG AGCTGTTGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37805385	NES09107673	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27648546					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805385	NES09107673	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148246015 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15295	CpG island 15295			514 bp distal
Fbxo2	F-box protein 2			Intron
				Noncoding-Transcript-Variant
Fbxo44	F-box protein 44			1352 bp upstream
Rr398857	regulatory region 398857			1229 bp downstream
Rr604608	regulatory region 604608			927 bp distal
Rr604609	regulatory region 604609			within coordinates
Tssr40263	transcription start site region 40263			1362 bp downstream
Tssr40264	transcription start site region 40264			928 bp downstream
Tssr40265	transcription start site region 40265			906 bp downstream
Tssr40266	transcription start site region 40266			878 bp downstream
Tssr44596	transcription start site region 44596			1956 bp upstream
Tssr44597	transcription start site region 44597			1739 bp upstream
Tssr44598	transcription start site region 44598			1721 bp upstream
Tssr44599	transcription start site region 44599			1628 bp upstream
Tssr44600	transcription start site region 44600			1486 bp upstream