rs27648545 SNP Detail

Summary

• ID
  rs27648545
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148246125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAGTCCC TGGGCTCAGG
  GGCCCAATCC AGGTGAGTGA GTCAGCTTGG GGTCAGCATC CATGGCTAGA TAACTTTCCT
  ACAGCAACAA TGTGGCAAGT TGTGTGCAAG GGAGCAGGTG GGGGGGGCTG TAATCCGATC
  TGGGGCCTCA ATGCCAGGCC TAGGGGCCAG GAGAGAGGAC TGGGTGAGGT GCACCTTTCC
  K
  GGGAGCATCA GGTATCTGCT GGGGCCAGGG CAGGGCTGGG TGATGGTAGA GAGGTGAGGA
  CGTTGGGCCC AGCTCTCCAG AGCTGTTGGA AGCAGGACAG ACAATTGTTT TTCCTTCTGC
  TTGATGATGT CCTGTGGTGG AACCTGGAAG AAATGCTAGG ACCCTCTGCA CCCGTTTTCT
  CATTGCCAAT GAAGGAGTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37805384	NES09107674	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	T	G		G	G	G	G	G	G	G	G	G
ss45690135	mCV24937581	ABI	CRAMUS_MOUSE	f	SNP	T	T	G					G		G
ss147994710	ENSMUSSNP4744500	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27648545					SNP	T	T	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805384	NES09107674	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148246125 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15295	CpG island 15295			624 bp distal
Fbxo2	F-box protein 2			Intron
				Noncoding-Transcript-Variant
Fbxo44	F-box protein 44			1462 bp upstream
Rr398857	regulatory region 398857			1339 bp downstream
Rr604608	regulatory region 604608			1037 bp distal
Rr604609	regulatory region 604609			within coordinates
Tssr40263	transcription start site region 40263			1472 bp downstream
Tssr40264	transcription start site region 40264			1038 bp downstream
Tssr40265	transcription start site region 40265			1016 bp downstream
Tssr40266	transcription start site region 40266			988 bp downstream
Tssr44597	transcription start site region 44597			1849 bp upstream
Tssr44598	transcription start site region 44598			1831 bp upstream
Tssr44599	transcription start site region 44599			1738 bp upstream
Tssr44600	transcription start site region 44600			1596 bp upstream