rs27648543 SNP Detail

Summary

• ID
  rs27648543
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148246554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAATTCACC ATGGCTGATG GAGGACTCAC TGTGTGCTCT
  AAAGAGAGGG GAAATCCCGA GTCAGCTTTC CAGTGTCTGA CAGTGTAGAT GCTATTGACT
  R
  CATCCCCTTA GAAGAGGTTT AGGGAACGGG CCACCTGTCC CTCCCCTGCC CCAGGCCTGC
  TCCCTTATTT CCTTGGCTTC TTGGGGTCAG ACCAGTCTTC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37805382	NES09107572	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27648543					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805382	NES09107572	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148246554 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15295	CpG island 15295			1053 bp distal
Cpgi15296	CpG island 15296			1867 bp proximal
Fbxo2	F-box protein 2			Intron
				Noncoding-Transcript-Variant
Fbxo44	F-box protein 44			1891 bp upstream
Rr398857	regulatory region 398857			1768 bp downstream
Rr604608	regulatory region 604608			1466 bp distal
Rr604609	regulatory region 604609			336 bp distal
Tssr40263	transcription start site region 40263			1901 bp downstream
Tssr40264	transcription start site region 40264			1467 bp downstream
Tssr40265	transcription start site region 40265			1445 bp downstream
Tssr40266	transcription start site region 40266			1417 bp downstream