rs27648542 SNP Detail

Summary

• ID
  rs27648542
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148246751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAG ATACTGCCCA CTCAGTGTCT
  R
  CTTACTCAAG GTTTCTTCTT CGGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37805381	NES09107573	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	A	G		G	A		G	A	A	A		A
ss147994725	ENSMUSSNP1040882	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
ss321417748	CHEV_4_147536403	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27648542					SNP	A	A	G	A	G	A	A	G	A	G	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805381	NES09107573	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148246751 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15295	CpG island 15295			1250 bp distal
Cpgi15296	CpG island 15296			1670 bp proximal
Fbxo2	F-box protein 2			Intron
				Noncoding-Transcript-Variant
Rr398857	regulatory region 398857			1965 bp downstream
Rr604608	regulatory region 604608			1663 bp distal
Rr604609	regulatory region 604609			533 bp distal
Tssr40264	transcription start site region 40264			1664 bp downstream
Tssr40265	transcription start site region 40265			1642 bp downstream
Tssr40266	transcription start site region 40266			1614 bp downstream
Tssr40267	transcription start site region 40267			1923 bp upstream