rs27648540 SNP Detail

Summary

• ID
  rs27648540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148246901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTT TTGTCCTGTC TCCCAGTCTT
  Y
  ACTGTGGAGT CAGGCGTCCC CACTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37805379	NES09107575	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T		C	T	C	T		C	T	T	T		T
ss45672687	mCV24937902	ABI	CRAMUS_MOUSE	f	SNP		T	C				C		T
ss147994736	ENSMUSSNP6484346	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
ss321417750	CHEV_4_147536553	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27648540					SNP	T	T	C	T	C	T	C	C	T	C	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805379	NES09107575	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148246901 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15295	CpG island 15295			1400 bp distal
Cpgi15296	CpG island 15296			1520 bp proximal
Fbxo2	F-box protein 2			Intron
				Noncoding-Transcript-Variant
Rr604608	regulatory region 604608			1813 bp distal
Rr604609	regulatory region 604609			683 bp distal
Rr604610	regulatory region 604610			1966 bp proximal
Tssr40264	transcription start site region 40264			1814 bp downstream
Tssr40265	transcription start site region 40265			1792 bp downstream
Tssr40266	transcription start site region 40266			1764 bp downstream
Tssr40267	transcription start site region 40267			1773 bp upstream