rs27648534 SNP Detail

Summary

• ID
  rs27648534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148249769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGAAGGAC TGGTGAGCAG
  CTATTGGGGA GGGTTCGGGA CTGGAGGGAA AGGGGAAATG GTGGTGGTGG TGGAGGGATT
  AGCTCTTTGC CACACTTTCA GTGTTGTTGA CACGTGGAAC ACGGGTCCGC AAGGGTTGGC
  AACTGGTGGA AAGCTATTCC TGCCTTGAGT TTAAAATGTT AACAAATGGG TGTGCACTTT
  Y
  TCGTGTTTAA AAGGCAAGAA TACTACTAAT AAATTAAGGC TTGCTTACCC CCTTCATGTA
  CACACACACA CACACACACA CACACACACA TTTGTGTCCC TCCTAGGATG GCTTTGGTTC
  CAAGGTTGGG TCTGGTTCAC TTTGAGTTTG GCTGGGGGGT GGGGTGGGGG GACCCAGTCT
  CCTCTGTGGA CGAAGTTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37805373	NES09107489	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27648534					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805373	NES09107489	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148249769 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15296	CpG island 15296			228 bp distal
Cpgi15297	CpG island 15297			339 bp proximal
Fbxo2	F-box protein 2			Intron
				Noncoding-Transcript-Variant
Gm68449	predicted gene, 68449			182 bp downstream
Rr604610	regulatory region 604610			881 bp distal
Rr604611	regulatory region 604611			1935 bp proximal
Tssr40267	transcription start site region 40267			1073 bp downstream
Tssr44601	transcription start site region 44601			1054 bp downstream