rs27648533 SNP Detail

Summary

• ID
  rs27648533
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148250116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCC TGCAGGTACT CGGGTCGCAC
  K
  GATGCGGGCA GCCTGTATGA GCTCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37805372	NES09107491	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		T	G	T	G		T	G	G	G		G
ss45597325	mCV24937925	ABI	CRAMUS_MOUSE	f	SNP		G					T
ss147994772	ENSMUSSNP3190069	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss321417761	CHEV_4_147539768	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27648533					SNP	G	G	G	G	G	G	T	T	G	T	G	G	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805372	NES09107491	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148250116 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15296	CpG island 15296			575 bp distal
Cpgi15297	CpG island 15297			within coordinates
Fbxo2	F-box protein 2			Coding-Synonymous
				Noncoding-Transcript-Variant
Gm68449	predicted gene, 68449			within coordinates
Rr604610	regulatory region 604610			1228 bp distal
Rr604611	regulatory region 604611			1588 bp proximal
Tssr40267	transcription start site region 40267			1420 bp downstream
Tssr44601	transcription start site region 44601			707 bp downstream