rs27648528 SNP Detail

Summary

• ID
  rs27648528
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148251810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGAGGAG AGGTCTTGTC
  ACTGTTGTCC TAATAGAGCC ACTGTGACCC CCCCCCCCCA CCCCCAGCTC TGCCTTCATC
  TTTTAGTCTG TGGTTTGGTG CCACCTGCTG GTGAGGTGGG ACAGCCGCCT GAGCTGGGAC
  TTGCCTTAGT TCCTTGACCC TTCTGTCTAA TTGCTTCTAA GTCTCTGTCT TGGGTCTTCC
  R
  GGACTACGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGACCCGT TCTGGTGCCC ATAAAAGAAA AAGCATCAGA TCGCCTGCCT TTGGAATTCT
  AGGTGGTTGT GAGCCTGACA TAGTGCTGGG ATTTGAATGT GGCTCCTCTG GGAGAACAGC
  AAGTGCTCTT AACCTCCACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37805367	NES09107454	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27648528					SNP	G	G	G	G	A	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805367	NES09107454	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148251810 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15297	CpG island 15297	365 bp distal
Fbxo2	F-box protein 2	929 bp downstream
Gm68449	predicted gene, 68449	within coordinates
Rr604611	regulatory region 604611	85 bp distal
Rr604612	regulatory region 604612	867 bp proximal
Rr604613	regulatory region 604613	899 bp proximal
Rr604614	regulatory region 604614	1124 bp proximal
Tssr44601	transcription start site region 44601	980 bp upstream