rs27648526 SNP Detail

Summary

• ID
  rs27648526
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148252392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAA GGAGTTGGCT GAAGTGTGGC
  R
  TGACAGTTAA ATTCAGTAGT TCTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37805365	NES09107431	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A		G		G	A		G	A	A	A		A
ss45631997	mCV25354374	ABI	CRAMUS_MOUSE	f	SNP		A					G		A
ss147994821	ENSMUSSNP5246615	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
ss321417770	CHEV_4_147542044	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27648526					SNP	A	A	A	A	A	A	G	G	A	G	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805365	NES09107431	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148252392 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15297	CpG island 15297	947 bp distal
Cpgi15298	CpG island 15298	1741 bp proximal
Fbxo2	F-box protein 2	1511 bp downstream
Gm68449	predicted gene, 68449	within coordinates
Rr604611	regulatory region 604611	667 bp distal
Rr604612	regulatory region 604612	285 bp proximal
Rr604613	regulatory region 604613	317 bp proximal
Rr604614	regulatory region 604614	542 bp proximal
Tssr44601	transcription start site region 44601	1562 bp upstream