rs27648525 SNP Detail

Summary

• ID
  rs27648525
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148252439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGG AGACCATCTG GTTGACAGAG
  R
  CGTGGCGGTC AGGAGGTTGT GTTGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37805364	NES09107432	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G		A		A		A	G	G	G		G
ss45603331	mCV25354383	ABI	CRAMUS_MOUSE	f	SNP		G				A		G
ss147994828	ENSMUSSNP809051	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
ss321417771	CHEV_4_147542091	CHEVERUD	SCREENING_POP	f	SNP										G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27648525					SNP	G	G	G	G	G	A	A	G	A	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805364	NES09107432	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148252439 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15297	CpG island 15297	994 bp distal
Cpgi15298	CpG island 15298	1694 bp proximal
Fbxo2	F-box protein 2	1558 bp downstream
Gm68449	predicted gene, 68449	within coordinates
Rr604611	regulatory region 604611	714 bp distal
Rr604612	regulatory region 604612	238 bp proximal
Rr604613	regulatory region 604613	270 bp proximal
Rr604614	regulatory region 604614	495 bp proximal
Tssr44601	transcription start site region 44601	1609 bp upstream