rs27648521 SNP Detail

Summary

• ID
  rs27648521
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148252503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTCAGTAGT TCTGGGAGAC CATCTGGTTG ACAGAGACGT
  GGCGGTCAGG AGGTTGTGTT GCTCAGGGAG GTGAAGTGTG AGTTCTTGGG CATCCCAGTG
  K
  GTGCTTGTTG TCCACTCAGA TGTGAACAGG GATTGTCACC ACCCTTCCCT AACATGAAAC
  AGAATAAGAT GGCAAGTGGC ACCCGGAATC AACATAGCAA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	WSB/EiJ
ss37805360	NES09107436	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	WSB/EiJ
rs27648521					SNP	T	T	T	T	T	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805360	NES09107436	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148252503 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15297	CpG island 15297	1058 bp distal
Cpgi15298	CpG island 15298	1630 bp proximal
Fbxo2	F-box protein 2	1622 bp downstream
Gm68449	predicted gene, 68449	within coordinates
Rr604611	regulatory region 604611	778 bp distal
Rr604612	regulatory region 604612	174 bp proximal
Rr604613	regulatory region 604613	206 bp proximal
Rr604614	regulatory region 604614	431 bp proximal
Tssr44601	transcription start site region 44601	1673 bp upstream