rs27648519 SNP Detail

Summary

• ID
  rs27648519
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148253055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAACTGGG CTGAGCCCAC
  CACCCTGGAG GCATCGAGGA GGAGCTGAGG TCAGCGTTCC TCAAGGAAAA TTCCACGTGT
  CAGCCAGCAG GTGGCAGCCA AGGGCTCTCT CTCTCTCTTA GGGCAACAAG TTGAATATGC
  ATTGCTACTG AATATGAGTT GAATGTGACT TCCTACTACA TGTCAGGAAG AGATCACAGT
  Y
  AGTCAGCCTC TGCTGGCGTT CACACTGTAG AGGGAGAAAC ATGACTAACA AACAATCAAA
  TGAAGCCAGC GGCCAACATG AGGTGACACT CTCCCTACTC AGTGGGCGCC CATTAAGAAC
  TGTGCTGGAG GCAGAGGCAG GTGGATCTCC ATGAGTTTAA GACCAATGTG GTCTCTACAT
  AGTGAGCTCT AGGCCAGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37805358	NES09107420	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27648519					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805358	NES09107420	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148253055 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15297	CpG island 15297	1610 bp distal
Cpgi15298	CpG island 15298	1078 bp proximal
Gm68449	predicted gene, 68449	within coordinates
Rr604611	regulatory region 604611	1330 bp distal
Rr604612	regulatory region 604612	within coordinates
Rr604613	regulatory region 604613	325 bp distal
Rr604614	regulatory region 604614	100 bp distal