rs27648517 SNP Detail

Summary

• ID
  rs27648517
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148254861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGC TGTTAACTAG TCATAGGTGG
  S
  AGAGGCTGGT TGCTCATGAG GATAT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37805356	NES09107355	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		G	C	G	C		G	C	C	C		C
ss45611695	mCV23437577	ABI	CRAMUS_MOUSE	f	SNP		C					G
ss321417782	CHEV_4_147544513	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27648517					SNP	C	C	C	C	C	C	G	G	C	G	C	C	G	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805356	NES09107355	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148254861 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15298	CpG island 15298	449 bp distal
Gm68449	predicted gene, 68449	619 bp upstream
Rr604612	regulatory region 604612	1667 bp distal
Rr604614	regulatory region 604614	1906 bp distal
Rr604615	regulatory region 604615	311 bp proximal
Rr604616	regulatory region 604616	557 bp proximal