rs27648516 SNP Detail

Summary

• ID
  rs27648516
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148254888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCTTCTC CTTTTCTTCC
  CATCAGGACC CCCAGGCTGT GGAATGGCGC CGCCATCCCA CATTCAGGGT GGATCTATCC
  ACCTCATTTA ACCCAATCAA GAAACCTCTC ACAGACAAGC CCAGAGACTT GTCTCCTCCA
  CTATTGTAGG AGCTGTTAAC TAGTCATAGG TGGGAGAGGC TGGTTGCTCA TGAGGATATC
  R
  GAAGTGGCTT CCAGCTCAGG GATGAGCTAA GTCATTACGG TTCAGGATCA GACATGGGAT
  CCTACTGGAG CCAGAGCAAG GATGAGCTGG GGGCTGAAAT GGACATGACA TGGAAGGTGA
  CTTCAGGGTT CTAGCATGGG TCATACCCCC AGGCAGATTG AATGAGCACC AGGGGTGCCA
  AGACAGTTTT AATTAAGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37805355	NES09107356	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27648516					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805355	NES09107356	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148254888 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15298	CpG island 15298	476 bp distal
Gm68449	predicted gene, 68449	646 bp upstream
Rr604612	regulatory region 604612	1694 bp distal
Rr604614	regulatory region 604614	1933 bp distal
Rr604615	regulatory region 604615	284 bp proximal
Rr604616	regulatory region 604616	530 bp proximal