rs27648510 SNP Detail

Summary

• ID
  rs27648510
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148256265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCAGCAG GAGAGATTCA
  GGGAGATATT AGGAAGAACT GTCTGGGTGG GGAAGGGGGT GTGAGGATGG TGGAAGCAGC
  CATGCGGTGA TGTGGTCAGA TGGGGAGCTC TGTGGAGTCC CCCATTTCCA AATGTGTATC
  CTGCCTTTGC CTCCTGAGGC CAAGCCACCT GATCACCTCC ATCCCAGGCC ACCTGGGACC
  Y
  TTCTCTGCTT TTTGGGCCAC CTCCCATCAG TGAATGTGGG GTCAACCTCC TCCTCTCCCC
  TGACTCCCCT TCTTTCCTTT TCTTCCAGGA GTCAGGAGAC ACACATGTCT AGGGACAAGA
  ACACACATTT AGTTTAGGCC TGTAATCTCA GCTACTGGGA AAGCCGAGAC AAGAGAATAG
  AAAGTTCTAG GCCAGCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37805349	NES09107332	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27648510					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37805349	NES09107332	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148256265 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15298	CpG island 15298	1853 bp distal
Rr604615	regulatory region 604615	188 bp distal
Rr604616	regulatory region 604616	826 bp distal
Rr604617	regulatory region 604617	1768 bp proximal